| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 1,116,762 | C→T | G102G (GGG→GGA) | mdtG ← | predicted drug efflux system |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 1,116,762 | 0 | C | T | 95.3% | 321.1 / 3.5 | 106 | G102G (GGG→GGA) | mdtG | predicted drug efflux system |
| Reads supporting (aligned to +/- strand): ref base C (0/5); new base T (0/101); total (0/106) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.33e-01 | |||||||||||
Only 100 of 106 total aligned reads displayed.
AAGAAGCGCCCGCAGGATCAAAAACTGCCAGATATTTTGTGCCAGCCCCATCAACACCATCACGATGCCCATGCCGAG > W3110S.gb/1116717‑1116794 | aagaagCGCCCGCAGGATCAAAAACTGCCAGATATTTTGTGCCAGCCCCATCAACACCATCa < 1:2165079/62‑1 (MQ=255)aagaagCGCCCGCAGGATCAAAAACTGCCAGATATTTTGTGCCAGCCCCATCAACACCATCa < 1:2146638/62‑1 (MQ=255)aagaagCGCCCGCAGGATCAAAAACTGCCAGATATTTTGTGCCAGCCCCATCAACACCATCa < 1:1956509/62‑1 (MQ=255)aagaagCGCCCGCAGGATCAAAAACTGCCAGATATTTTGTGCCAGCCCCATCAACACCATCa < 1:1356349/62‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2356003/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2618531/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2607592/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2590756/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2539528/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2534416/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2507068/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2461309/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2441308/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2435141/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2425152/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2673020/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2339213/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2332008/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2318021/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2299972/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2297247/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2296653/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2281727/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2271844/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2242621/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2223756/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:371069/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:975523/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:963326/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:882391/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:867850/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:738458/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:734642/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:668759/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:660351/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:593941/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:540839/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:507165/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:495140/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2653623/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:332170/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2856529/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:285180/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:280245/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2800947/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2775609/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2741617/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:269367/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2678072/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2674800/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2213771/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1336799/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1604281/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1560012/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1549453/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:154853/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1530519/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1524346/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1519926/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1517277/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1419228/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1357296/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1342961/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1615984/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1326415/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1319967/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:121608/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1191537/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1170252/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1163183/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1159336/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1148006/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1100725/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1082385/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:108129/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1810643/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1013568/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2158225/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2109816/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2106981/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2106928/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2101314/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2071163/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2046238/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2031939/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2007963/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1994861/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1907427/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:2218391/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1809389/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1799571/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1767242/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1742911/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1710507/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1698778/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:168873/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1676754/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGAg < 1:1648530/58‑1 (MQ=255) aaaaCTGCCAGATATTTTGTGCCAGTCCCATCAACACCAT‑‑CGATGCCCATGCCGAg < 1:2829248/56‑1 (MQ=255) ttGTGCCAGTCCCATCAACACCATCACGATGCCCATGCCGat < 1:258959/42‑2 (MQ=255) | AAGAAGCGCCCGCAGGATCAAAAACTGCCAGATATTTTGTGCCAGCCCCATCAACACCATCACGATGCCCATGCCGAG > W3110S.gb/1116717‑1116794 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |