Predicted mutation
evidence seq id position mutation annotation gene description
RA W3110S.gb 70,434 C→T N16N (AAC→AAT)  araC → DNA‑binding transcriptional dual regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb70,4340CT100.0% 408.6 / NA 120N16N (AAC→AAT) araCDNA‑binding transcriptional dual regulator
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (83/37);  total (83/37)

Only 100 of 120 total aligned reads displayed.

TATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAACGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGATTTTTTTA  >  W3110S.gb/70386‑70492
                                                |                                                          
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:1627107/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:1408670/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:1418933/62‑1 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:2915352/62‑1 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:2832035/62‑1 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:152892/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:2746609/62‑1 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:1539392/62‑1 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:2616942/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:1600052/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:1604201/62‑1 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:1608948/62‑1 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:2596797/62‑1 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:295785/62‑1 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:1684884/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:1687078/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:2316665/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:1740750/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:2313522/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:1817161/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:2298981/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:2166488/62‑1 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:2162070/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:2034624/62‑1 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:211089/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:1217488/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:1003735/62‑1 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:1063333/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:106904/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:783938/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:771908/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:1131711/62‑1 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:1133059/62‑1 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:717188/62‑1 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:695579/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:1199929/62‑1 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:610588/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:579646/62‑1 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:1364387/62‑1 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:535406/62‑1 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:125699/62‑1 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:411857/62‑1 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:1257266/62‑1 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:392725/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:1271375/62‑1 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:321771/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:1290299/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:1295050/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:311263/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               >  1:1323249/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtg                                                >  1:2589774/1‑61 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGCTTAATGCCCATCtggtgg                                               >  1:1026023/1‑62 (MQ=255)
tATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACCCGTTTAATGCCCATCtggtgg                                               >  1:120884/1‑62 (MQ=255)
    gCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:1213757/58‑1 (MQ=255)
    gCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:1534059/58‑1 (MQ=255)
    gCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:2715612/58‑1 (MQ=255)
    gCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:1622736/58‑1 (MQ=255)
    gCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:2252900/58‑1 (MQ=255)
    gCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCtggtgg                                               <  1:95499/58‑1 (MQ=255)
           cgcAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACg                                    >  1:732584/1‑62 (MQ=255)
           cgcAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACg                                    >  1:1169508/1‑62 (MQ=255)
           cgcAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACg                                    >  1:1116359/1‑62 (MQ=255)
           cgcAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACg                                    >  1:58949/1‑62 (MQ=255)
           cgcAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACg                                    >  1:1927414/1‑62 (MQ=255)
           cgcAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACg                                    >  1:577569/1‑62 (MQ=255)
           cgcAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACg                                    >  1:439476/1‑62 (MQ=255)
           cgcAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACg                                    >  1:419894/1‑62 (MQ=255)
           cgcAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACg                                    >  1:1257184/1‑62 (MQ=255)
           cgcAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACg                                    >  1:1288161/1‑62 (MQ=255)
           cgcAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACg                                    >  1:791911/1‑62 (MQ=255)
           cgcAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACg                                    >  1:1318870/1‑62 (MQ=255)
           cgcAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACg                                    >  1:1481457/1‑62 (MQ=255)
           cgcAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACg                                    >  1:925202/1‑62 (MQ=255)
           cgcAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACg                                    >  1:2774410/1‑62 (MQ=255)
           cgcAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACg                                    >  1:2183733/1‑62 (MQ=255)
           cgcAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACg                                    >  1:2213413/1‑62 (MQ=255)
           cgcAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACg                                    >  1:1780816/1‑62 (MQ=255)
           cgcAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACg                                    >  1:1733518/1‑62 (MQ=255)
           cgcAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACg                                    >  1:235197/1‑62 (MQ=255)
           cgcAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACg                                    >  1:2227914/1‑62 (MQ=255)
           cgcAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGCGGGTTTAACg                                    >  1:2391932/1‑62 (MQ=255)
           cgcAAAATGATCCCCTGCTGCCGGGATACTCGTTTAATGCCCATCTGGTGGC‑GGTTTAACg                                    >  1:2314241/1‑61 (MQ=255)
                                           tttAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGAtttttt    >  1:1691358/1‑62 (MQ=255)
                                           tttAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGAtttttt    >  1:1148598/1‑62 (MQ=255)
                                           tttAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGAtttt      >  1:254735/1‑60 (MQ=255)
                                             tAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGa          >  1:2534807/1‑54 (MQ=255)
                                             tAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGATTTTTTTa  <  1:19784/62‑1 (MQ=255)
                                             tAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGATTTTTTTa  >  1:738749/1‑62 (MQ=255)
                                             tAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGATTTTTTTa  >  1:2219133/1‑62 (MQ=255)
                                             tAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGATTTTTTTa  >  1:1089747/1‑62 (MQ=255)
                                             tAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGATTTTTTTa  >  1:711828/1‑62 (MQ=255)
                                             tAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGATTTTTTTa  >  1:1897199/1‑62 (MQ=255)
                                             tAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGATTTTTTTa  >  1:1229453/1‑62 (MQ=255)
                                             tAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGATTTTTTTa  >  1:430410/1‑62 (MQ=255)
                                             tAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGATTTTTTTa  >  1:156539/1‑62 (MQ=255)
                                             tAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGATTTTTTTa  >  1:1393137/1‑62 (MQ=255)
                                             tAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGATTTTTTTa  >  1:2916714/1‑62 (MQ=255)
                                             tAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGATTTTTTTa  >  1:146268/1‑62 (MQ=255)
                                             tAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGATTTTTTTa  >  1:2711045/1‑62 (MQ=255)
                                             tAATGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGAGTTTTTTa  >  1:1258033/1‑62 (MQ=255)
                                                |                                                          
TATGGCTGAAGCGCAAAATGATCCCCTGCTGCCGGGATACTCGTTTAACGCCCATCTGGTGGCGGGTTTAACGCCGATTGAGGCCAACGGTTATCTCGATTTTTTTA  >  W3110S.gb/70386‑70492

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑