| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 1,842,680 | C→T | K146K (AAG→AAA) | ynjF ← | predicted phosphatidyl transferase, inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 1,842,680 | 0 | C | T | 84.6% | 86.4 / 8.6 | 39 | K146K (AAG→AAA) | ynjF | predicted phosphatidyl transferase, inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base C (0/6); new base T (0/33); total (0/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.63e-01 | |||||||||||
CACAAACAGTAAGATCGTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAG > W3110S.gb/1842623‑1842734 | cacaAACAGTAAGATCGTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTAt < 1:1106710/62‑1 (MQ=255)cacaAACAGTAAGATCGTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTAt < 1:964615/62‑1 (MQ=255)cacaAACAGTAAGATCGTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTAt < 1:232165/62‑1 (MQ=255)cacaAACAGTAAGATCGTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTAt < 1:672830/62‑1 (MQ=255)cacaAACAGTAAGATCGTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTAt < 1:49466/62‑1 (MQ=255)cacaAACAGTAAGATCGTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTAt < 1:1955581/62‑1 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:550325/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:2651462/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:2665161/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:2802340/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:2882137/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:377002/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:414930/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:509305/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:2495285/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:614446/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:665667/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:887119/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:915861/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:962792/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:978248/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:1067332/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:1082057/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:1184289/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:1229842/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:1235477/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:1535216/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:1552446/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:1738041/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:1756840/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:1947998/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:2135986/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:2171842/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:2254759/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:2263935/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:2296859/62‑2 (MQ=255) aaaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:2522104/62‑2 (MQ=255) aaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:1912078/61‑2 (MQ=255) aaaCGATTTATGCGCATAACCGGGATTATCAATCTGATGTTTCGCCGCCAGCGCAGCaaaa < 1:2751992/61‑2 (MQ=255) | CACAAACAGTAAGATCGTTTCTGTGCCTTCGGTTAATCCCCCCAGATAGTAAAACGACTTATGTGCATAACCGGGGTTATCAATCTGATGTTTTGCTGCCAGTGCAGCAAAG > W3110S.gb/1842623‑1842734 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |