| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 71,109 | T→C | T241T (ACT→ACC) | araC → | DNA‑binding transcriptional dual regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 71,109 | 0 | T | C | 99.3% | 490.0 / ‑5.0 | 144 | T241T (ACT→ACC) | araC | DNA‑binding transcriptional dual regulator |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (58/85); total (59/85) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.10e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.27e-01 | |||||||||||
Only 100 of 155 total aligned reads displayed.
AGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCA > W3110S.gb/71050‑71159 | aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGcaccac > 1:2331504/1‑62 (MQ=255)aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGcaccac > 1:414146/1‑62 (MQ=255)aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGcaccac > 1:1592874/1‑62 (MQ=255)aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGcaccac > 1:482384/1‑62 (MQ=255)aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGcaccac > 1:586983/1‑62 (MQ=255)aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGcaccac > 1:1178420/1‑62 (MQ=255)aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGcaccac > 1:2743399/1‑62 (MQ=255)aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGcaccac > 1:10936/1‑62 (MQ=255)aGCGTCTTAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTCTGAGcaccac > 1:2788319/1‑62 (MQ=255) tAATCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:1022362/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCAccc > 1:2796702/1‑57 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:2113663/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:2746200/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:1828488/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:327784/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:2587200/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:2586791/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:305700/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:2047015/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:285982/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:2470092/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:2122338/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:2256187/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:2822435/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:2814897/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:1757888/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:2365776/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:2382000/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:2402461/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:438842/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:1075972/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:1178070/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:921343/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:1635911/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:903124/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:549423/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:124790/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:1520155/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:600975/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:66320/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:758019/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:1313508/1‑62 (MQ=255) tAAGCTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGAACCACCCGGATg > 1:14729/1‑62 (MQ=255) tAAGCTGCCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:1923819/1‑62 (MQ=255) tAAACTGGCGCGAGGACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATg > 1:689090/1‑62 (MQ=255) cgcgAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGc > 1:108020/1‑62 (MQ=255) gACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:859993/62‑1 (MQ=255) gACCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:1648954/62‑1 (MQ=255) aCCAACGTATCAGCCAGGCGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:1322948/61‑1 (MQ=255) cGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCATCGTCGGTCGCAATGCTGGtttt < 1:2650395/62‑1 (MQ=255) cGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtttt < 1:754114/62‑1 (MQ=255) cGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtttt < 1:1061749/62‑1 (MQ=255) cGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtttt < 1:2870073/62‑1 (MQ=255) cGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtttt < 1:515322/62‑1 (MQ=255) cGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtttt < 1:385458/62‑1 (MQ=255) cGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtttt < 1:3943/62‑1 (MQ=255) cGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtttt < 1:948740/62‑1 (MQ=255) cGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtttt < 1:2724960/62‑1 (MQ=255) cGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtttt < 1:2635543/62‑1 (MQ=255) cGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtttt < 1:1519865/62‑1 (MQ=255) cGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtttt < 1:2280197/62‑1 (MQ=255) cGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtttt < 1:2076183/62‑1 (MQ=255) cGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtttt < 1:1348219/62‑1 (MQ=255) cGAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtttt < 1:1310970/62‑1 (MQ=255) gAAGCTGCTTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGtttt < 1:627004/61‑1 (MQ=255) tctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:2448550/35‑1 (MQ=38) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:842834/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:1429416/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:661703/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:669276/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:1306671/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:789042/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:1544602/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:84806/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:854540/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:884747/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:1213848/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:1183858/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:944110/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:1141632/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:1943578/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:2566345/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:2479350/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:2424288/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:2324044/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:2058620/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:2898668/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:2006351/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:551711/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:1865616/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:183058/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:1777436/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:1590197/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:1546472/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:522271/36‑1 (MQ=255) gctTTTGAGCACCACCCGGATGCCTATCGCCACCg < 1:1749703/35‑1 (MQ=255) ctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:414003/35‑1 (MQ=255) ctTTTGAGCACCACCCGGATGCCTATCGCCACCgt < 1:1303361/35‑1 (MQ=255) ctTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCa > 1:1404327/1‑62 (MQ=255) ctTTTGAGCACCACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCa > 1:2538260/1‑62 (MQ=255) | AGCGTCTTAAGCTGGCGCGAGGACCAACGCATTAGTCAGGCGAAGCTGCTTTTGAGCACTACCCGGATGCCTATCGCCACCGTCGGTCGCAATGTTGGTTTTGACGATCA > W3110S.gb/71050‑71159 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |