| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 121,930 | A→G | intergenic (‑379/‑162) | aroP ← / → pdhR | aromatic amino acid transporter/DNA‑binding transcriptional dual regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 121,930 | 0 | A | G | 79.6% | 95.1 / 18.9 | 49 | intergenic (‑379/‑162) | aroP/pdhR | aromatic amino acid transporter/DNA‑binding transcriptional dual regulator |
| Reads supporting (aligned to +/- strand): ref base A (10/0); new base G (0/39); total (10/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.22e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.12e-01 | |||||||||||
TACGTAAAGTCTACATTTGTGCATAGTTACAACTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAG > W3110S.gb/121899‑121972 | tACGTAAAGTCTACATTTGTGCATAGTTACAACTTTGAAACGTTATATATGTCAAgttgtt > 1:1577109/1‑61 (MQ=255)tACGTAAAGTCTACATTTGTGCATAGTTACAACTTTGAAACGTTATATATGTCAAgttgtt > 1:1809040/1‑61 (MQ=255)tACGTAAAGTCTACATTTGTGCATAGTTACAACTTTGAAACGTTATATATGTCAAgttgtt > 1:2666486/1‑61 (MQ=255)tACGTAAAGTCTACATTTGTGCATAGTTACAACTTTGAAACGTTATATATGTCAAgttgtt > 1:2617257/1‑61 (MQ=255)tACGTAAAGTCTACATTTGTGCATAGTTACAACTTTGAAACGTTATATATGTCAAgttgtt > 1:1712209/1‑61 (MQ=255)tACGTAAAGTCTACATTTGTGCATAGTTACAACTTTGAAACGTTATATATGTCAAgttgtt > 1:1657954/1‑61 (MQ=255)tACGTAAAGTCTACATTTGTGCATAGTTACAACTTTGAAACGTTATATATGTCAAgttgtt > 1:1560432/1‑61 (MQ=255)tACGTAAAGTCTACATTTGTGCATAGTTACAACTTTGAAACGTTATATATGTCAAgttgtt > 1:477620/1‑61 (MQ=255)tACGTAAAGTCTACATTTGTGCATAGTTACAACTTTGAAACGTTATATATGTCAAgttgtt > 1:606262/1‑61 (MQ=255)tACGTAAAGTCTACATTTGTGCATAGTTACAACTTTGAAACGTTATATATGTCAAgttgt > 1:1413987/1‑60 (MQ=255) cATTTGTGCATGGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:1414943/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:2270435/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:697161/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:2577722/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:2586146/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:2335113/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:2135909/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:2678566/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:2688322/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:2756288/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:2851885/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:2925693/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:343974/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:482032/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:603992/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:1788776/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:1059665/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:12912/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:1673676/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:1695032/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:936023/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:926318/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:878249/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:1903026/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:2069750/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:2110076/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:2134639/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:922718/61‑1 (MQ=255) cATTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:2222171/61‑1 (MQ=255) aTTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:98336/60‑1 (MQ=255) aTTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:944283/60‑1 (MQ=255) aTTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:1010786/60‑1 (MQ=255) aTTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:2508519/60‑1 (MQ=255) aTTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:2254744/60‑1 (MQ=255) aTTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:2163036/60‑1 (MQ=255) aTTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:1719540/60‑1 (MQ=255) aTTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:1710354/60‑1 (MQ=255) aTTTGTGCATAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:1422335/60‑1 (MQ=255) aTAGTTACAGCTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAg < 1:1102216/52‑1 (MQ=255) | TACGTAAAGTCTACATTTGTGCATAGTTACAACTTTGAAACGTTATATATGTCAAGTTGTTAAAATGTGCACAG > W3110S.gb/121899‑121972 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |