| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 3,655,537 | C→T | P86P (CCG→CCA) | yifK ← | predicted transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 3,655,537 | 0 | C | T | 94.2% | 253.7 / 4.1 | 87 | P86P (CCG→CCA) | yifK | predicted transporter |
| Reads supporting (aligned to +/- strand): ref base C (5/0); new base T (0/82); total (5/82) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.71e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.44e-01 | |||||||||||
AGAGATCCCCACCGCCATCCACATAAACCAGTAAGACCAGGCGGTGAGATAGCCAAAGAACGGGCTCATATAACGATGCGCATAAACGGCGAACGAACCGGTAACCGGTTCGA > W3110S.gb/3655477‑3655589 | agagATCCCCACCGCCATCCACATAAACCAGTAAGACCAGGCGGTGAGATAGCCAAAGAAc < 1:474739/61‑1 (MQ=255)agagATCCCCACCGCCATCCACATAAACCAGTAAGACCAGGCGGTGAGATAGCCAAAGAAc < 1:1452916/61‑1 (MQ=255)agagATCCCCACCGCCATCCACATAAACCAGTAAGACCAGGCGGTGAGATAGCCAAAGAAc < 1:1355465/61‑1 (MQ=255)agagATCCCCACCGCCATCCACATAAACCAGTAAGACCAGGCGGTGAGATAGCCAAAGAAc < 1:758327/61‑1 (MQ=255)agagATCCCCACCGCCATCCACATAAACCAGTAAGACCAGGCGGTGAGATAGCCAAAGAAc < 1:1293966/61‑1 (MQ=255)agagATCCCCACCGCCATCCACATAAACCAGTAAGACCAGGCGGTGAGATAGCCAAAGAAc < 1:1288198/61‑1 (MQ=255)agagATCCCCACCGCCATCCACATAAACCAGTAAGACCAGGCGGTGAGATAGCCAAAGAAc < 1:2017390/61‑1 (MQ=255)agagATCCCCACCGCCATCCACATAAACCAGTAAGACCAGGCGGTGAGATAGCCAAAGAAc < 1:2397685/61‑1 (MQ=255)agagATCCCCACCGCCATCCACATAAACCAGTAAGACCAGGCGGTGAGATAGCCAAAGAAc < 1:2351127/61‑1 (MQ=255)agagATCCCCACCGCCATCCACATAAACCAGTAAGACCAGGCGGTGAGATAGCCAAAGAAc < 1:2225002/61‑1 (MQ=255) ggTGAGATAACCAAAGAATGGGCTCATATAAGGATGCGCGTAAAc < 1:592135/45‑1 (MQ=255) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:2925586/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:2886521/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:319862/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:342773/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:2877793/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:2840612/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:2669345/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:2771183/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:2713013/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:2680503/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:552150/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:2622365/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:2562712/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:2457087/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:2396614/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:2387214/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:2278303/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:737600/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:992186/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:983581/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:964116/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:96228/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:886043/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:873578/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:87301/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:842017/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:837263/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:762992/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:435269/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:708856/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:705820/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:687690/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:651837/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:606930/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:601844/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:2243903/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:495239/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:488806/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1326749/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1590250/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:2252004/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1583985/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:15631/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1543212/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1499530/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1495102/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1405540/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1374699/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1351454/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1586292/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1284654/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1273162/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1228530/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1215861/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1100293/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:109777/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1073496/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1058293/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:104276/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:102548/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1995677/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1011859/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:2212297/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:213461/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:209812/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:2058033/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:2033321/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:2021377/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:2017885/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1979708/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1918231/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1897352/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1895433/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1888458/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1771645/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1715892/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1702697/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1675691/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:1653356/45‑1 (MQ=38) ggTGAGATAACCAAAGAATGCGCTCATATAACGATGCGCGTAAAc < 1:1634536/45‑1 (MQ=25) gTGAGATAACCAAAGAATGGGCTCATATAACGATGCGCGTAAAc < 1:898457/44‑1 (MQ=37) ccAAAGAACGGGCTCATATAACTATGCGCATAAACGGCGAACGAACCGGTAACCGGTTCGa > 1:75946/1‑61 (MQ=255) ccAAAGAACGGGCTCATATAACTATGCGCATAAACGGCGAACGAACCGGTAACCGGTTCGa > 1:2426906/1‑61 (MQ=255) ccAAAGAACGGGCTCATATAACGATGCGCATAAACGGCGAACGAACCGGTAACCGGTTCGa > 1:1374946/1‑61 (MQ=255) ccAAAGAACGGGCTCATATAACGATGCGCATAAACGGCGAACGAACCGGTAACCGGTTCGa > 1:2605027/1‑61 (MQ=255) ccAAAGAACGGGCTCATATAACGATGCGCATAAACGGCGAACGAACCGGTAACCGGTTCGa > 1:578201/1‑61 (MQ=255) | AGAGATCCCCACCGCCATCCACATAAACCAGTAAGACCAGGCGGTGAGATAGCCAAAGAACGGGCTCATATAACGATGCGCATAAACGGCGAACGAACCGGTAACCGGTTCGA > W3110S.gb/3655477‑3655589 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |