| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | W3110S.gb | 2,242,415 | +A | coding (209/1521 nt) | mglA ← | fused methyl‑galactoside transporter subunitsl and ATP‑binding components of ABC superfamily |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | W3110S.gb | 2,242,411 | 1 | . | A | 80.6% | 77.8 / 20.3 | 36 | coding (213/1521 nt) | mglA | fused methyl‑galactoside transporter subunitsl and ATP‑binding components of ABC superfamily |
| Reads supporting (aligned to +/- strand): ref base . (0/7); new base A (0/29); total (0/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.86e-01 | |||||||||||
TCGATCTCTTTACCCTGGAAT‑AAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCA > W3110S.gb/2242391‑2242452 | tCGATCTCTTTACCCTGGAAT‑AAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:3488/62‑1 (MQ=255)tCGATCTCTTTACCCTGGAAT‑AAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:118522/62‑1 (MQ=255)tCGATCTCTTTACCCTGGAAT‑AAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:399896/62‑1 (MQ=255)tCGATCTCTTTACCCTGGAAT‑AAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:443383/62‑1 (MQ=255)tCGATCTCTTTACCCTGGAAT‑AAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:501818/62‑1 (MQ=255)tCGATCTCTTTACCCTGGAAT‑AAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:562149/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:315286/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:278349/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:420269/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:440094/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:540087/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:656733/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:66907/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:778971/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:792977/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:890344/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:913545/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:94261/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:1442625/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:1059353/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:1173521/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:1191002/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:1282045/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:1359173/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:1383767/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:1050821/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:1443858/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:1484954/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:1514930/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:1531467/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:1531932/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:1647810/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:179245/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:222923/62‑1 (MQ=255) cGATCTCTTTACCCTGGAATAAAAATGGTGCCGGAGTCTATTTGATAAATACCAAACAGGCa < 1:1376475/62‑1 (MQ=255) aaT‑ATAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCa < 1:876512/44‑1 (MQ=255) | TCGATCTCTTTACCCTGGAAT‑AAAATGGTGCCGGAGTCTTTTTGATAAATACCAAACAGGCA > W3110S.gb/2242391‑2242452 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |