Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3349069	3349085	17	73 [0]	[0] 40	mtgA	biosynthetic peptidoglycan transglycosylase

GACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACA  >  W3110S.gb/3349007‑3349068                                                              | gACGGCTACGCACGTCGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:868594/1‑62 (MQ=255) gACGGCTACGCACGTAGGCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1387137/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGCCTTTGAAACGAAGTGGATTAGGTAATACa  >  1:333386/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:351597/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:534980/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:502896/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:453431/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:426486/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:416317/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:40420/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:388695/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:379096/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:621750/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:350007/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:341427/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:341425/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:28458/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:257832/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:247581/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:197193/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:76096/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:970806/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:963048/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:942494/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:9263/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:913247/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:907508/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:816594/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:779913/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:551596/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:701018/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:700867/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:670683/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:667233/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:666274/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:622683/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1618298/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1283032/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:138939/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1369332/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1361630/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:135581/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:134475/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1335565/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1324017/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1298480/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1393532/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1279719/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1210855/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1164176/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1115083/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1110102/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:110849/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1107901/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1011680/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:152205/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1006394/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1613796/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1595490/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1563608/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1553915/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1534229/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1531608/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1523347/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:188121/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1491398/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1467754/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1434863/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1432112/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1425818/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1425625/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1403392/1‑62 (MQ=255) gACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACa  >  1:1395410/1‑62 (MQ=255)                                                              | GACGGCTACGCACGTAGCCCGATGGCGAGGAGACTTTGAAACGAAGTGGATTAGGTAATACA  >  W3110S.gb/3349007‑3349068

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑