Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	61	149	89	41 [0]	[0] 158	–/thrL	–/thr operon leader peptide

‑AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTC  >  W3110S.gb/1‑60                                                             | caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:653541/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:1016697/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:172735/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:224701/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:263085/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:371292/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:516886/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:522001/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:535490/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:573549/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:17177/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:735948/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:801408/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:837255/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:898052/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:939666/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:951005/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:962743/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:981984/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:1405263/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:1090480/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:1106213/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:1139523/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:1178993/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:120250/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:1250004/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:1366707/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:164199/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:1429172/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:1430650/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:1531364/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:1557900/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:1569499/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:1582174/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:1624356/60‑1 (MQ=255) caGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:1632955/60‑1 (MQ=255)  aGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:665642/60‑1 (MQ=255)  aGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:341979/60‑1 (MQ=255)  aGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:1150356/60‑1 (MQ=255)                       cGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTc  <  1:291523/39‑1 (MQ=255)                           cAATATGTCTCTGTGTGTATTAAAAAAAGAGTGTc  <  1:1238692/35‑1 (MQ=255)                                                             | ‑AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTC  >  W3110S.gb/1‑60

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑