Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3660000	3660077	78	44 [1]	[0] 115	wzxE	O‑antigen translocase

CCGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGTA  >  W3110S.gb/3659940‑3660000                                                            |  ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGGAAGCCTTTCATCAGCGCCAGt   >  1:1174149/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:687190/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:435096/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:528473/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:544865/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:557149/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:564550/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:577668/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:583349/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:602060/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:632816/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:638035/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:672725/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:400875/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:736057/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:835913/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:84079/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:878417/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:920547/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:93496/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:949241/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:951900/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:996288/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:1564751/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:112963/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:1139646/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:1191304/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:1213863/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:1227059/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:1238852/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:1317707/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:1357919/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:1531170/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:1563257/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:102483/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:158144/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:1585487/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:197915/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:263891/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:291067/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:35129/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:359712/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGt   >  1:395315/1‑60 (MQ=255) ccGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGTa  >  1:378202/1‑61 (MQ=255)                                                            |  CCGACAATCAGCGATAACGCATTACCTGCGGCATCGCGAAAGCCTTTCATCAGCGCCAGTA  >  W3110S.gb/3659940‑3660000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑