Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4183371	4183945	575	51 [0]	[0] 70	gspD	general secretory pathway component, cryptic

CGGTCCACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGAGGAGG  >  W3110S.gb/4183310‑4183370                                                             | tggTCCACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:1146255/60‑1 (MQ=255) tggTCCACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:535478/60‑1 (MQ=255)     ccACTGATTATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:346757/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGGTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:1573642/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACGATCTTCGCGGAGaggagg  <  1:1307258/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:711576/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:337259/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:363632/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:399864/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:536333/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:566465/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:596896/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:608437/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:648168/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:67973/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:687912/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:276105/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:711937/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:71556/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:786356/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:80526/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:815467/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:831713/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:831832/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:836730/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:913715/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:995180/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:1429881/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:1075235/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:1137185/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:1144793/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:1152857/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:1184875/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:1217063/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:1225243/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:139536/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:319990/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:1523790/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:1596358/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:1623886/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:180032/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:241152/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:261310/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:271085/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:106159/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGGGTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:1558045/57‑1 (MQ=255)     ccACTGATGATAAGAGAGTTGATTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:1320245/57‑1 (MQ=255)      cACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:1321492/56‑1 (MQ=255)      cACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:1610458/56‑1 (MQ=255)            tgatAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:790741/50‑1 (MQ=255)                     agTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGaggagg  <  1:1559202/41‑1 (MQ=255)                                                             | CGGTCCACTGATGATAAGAGAGTTGGTTCGCTTATCCGCCACAATCTTCGCGGAGAGGAGG  >  W3110S.gb/4183310‑4183370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑