Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4405313	4405555	243	41 [0]	[0] 19	[hflX]	[hflX]

GCAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGC  >  W3110S.gb/4405251‑4405312                                                              | gcATCAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:304993/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:558267/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:392476/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:405971/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:419355/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:419365/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:442636/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:443278/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:4881/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:547382/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:547783/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:1065920/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:59967/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:710681/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:770596/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:800480/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:805867/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:809421/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:890150/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:905481/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:915241/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:1560435/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:1175178/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:121798/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:1163711/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:1321706/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:136028/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:1390002/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:1089495/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:1555319/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:1612309/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:168157/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:1016727/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:216607/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:26209/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:325664/62‑1 (MQ=255) gcAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:373387/62‑1 (MQ=255)  cAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:364402/61‑1 (MQ=255)   aaCAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:1306310/60‑1 (MQ=255)           aGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:1402342/52‑1 (MQ=255)                     ccGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGc  <  1:173005/42‑1 (MQ=255)                                                              | GCAACAGGACAGCGAAGAAACCGAATAAGGTTTCGGGCTGTTTTTTTACACGGGGAGCCAGC  >  W3110S.gb/4405251‑4405312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑