Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4416252	4416517	266	94 [0]	[0] 58	yjfK	conserved hypothetical protein

CACTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGATA  >  W3110S.gb/4416202‑4416251                                                  | cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:493567/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:658197/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:603698/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:573777/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:556757/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:54525/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:530996/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:530112/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:527917/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:526615/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:519049/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:494511/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:697356/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:46943/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:453025/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:432201/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:431170/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:427815/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:42777/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:420406/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:41461/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:401063/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:399551/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1032811/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:852880/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:98870/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:986883/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:954156/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:942948/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:932012/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:903949/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:88893/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:8853/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:88099/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:874279/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:855264/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:384570/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:841899/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:824904/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:807052/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:800611/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:798847/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:79097/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:781287/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:777418/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:775809/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:769801/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1264665/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1367167/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1348068/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1342881/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1342537/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1323933/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1322754/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1309851/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1300552/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1281604/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1267858/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1265315/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1369324/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1185697/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1160841/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1153070/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1120605/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:111381/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1080385/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1061379/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1056890/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1042385/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1040310/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1522151/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:354752/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:319811/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:263710/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:246414/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:228694/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:225890/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:210458/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1629865/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1614227/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1585013/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:37577/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1521728/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:151235/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:143260/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1401222/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1393958/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1389828/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1389242/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1380679/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:1373757/50‑1 (MQ=255) cacTTCAGGCGATGAGTTTCTGCAAATCAATAACACCGGCGGCGAAGata  <  1:1406992/50‑1 (MQ=255)  acTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:749203/49‑1 (MQ=255)           gATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGata  <  1:265420/40‑1 (MQ=255)                                                  | CACTTCAGGCGATGAGTTTCTGCAAATCAATACCACCGGCGGCGAAGATA  >  W3110S.gb/4416202‑4416251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑