Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4604557	4604609	53	73 [0]	[0] 36	yjjA	conserved hypothetical protein

TTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAG  >  W3110S.gb/4604495‑4604556                                                              | ttgaGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:925414/4‑62 (MQ=255) ttCAGCAAACCCTTAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:1647191/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:414222/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:490421/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:485416/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:480144/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:477179/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:462290/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:455785/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:452894/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:420429/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:54709/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:393845/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:385655/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:372218/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:362349/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:330429/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:321512/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:321011/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:713105/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:980430/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:886373/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:790907/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:770098/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:758622/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:745643/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:730794/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:721310/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:509578/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:706114/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:656661/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:640541/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:624973/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:617866/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:598468/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:56031/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:291637/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:1306873/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:140981/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:1403379/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:1389334/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:1388772/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:1375815/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:1358897/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:1343646/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:1330118/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:102130/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:128963/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:1289603/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:1232898/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:1215066/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:1202824/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:119743/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:1173786/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:1027912/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:1504590/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:310603/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:266803/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:249234/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:231816/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:219803/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:211914/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:177906/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:169236/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:1610067/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:1585066/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:1580125/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:1579964/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:1557383/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:1540744/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:1528436/1‑62 (MQ=255) ttCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAg  >  1:1489506/1‑62 (MQ=255) ttCAGAAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCAATGTTCAg  >  1:1026773/1‑62 (MQ=255)                                                              | TTCAGCAAACCCTGAATGCCGTCCAGATAGTTGGTGTCTTCTTTTTGCTCTTCACTGTTCAG  >  W3110S.gb/4604495‑4604556

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑