Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	200460	201092	633	43 [0]	[0] 8	hlpA–[lpxD]	hlpA,[lpxD]

TGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCAA  >  W3110S.gb/200398‑200459                                                              | tGACTTTAGGTGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:842629/1‑62 (MQ=255) tGACTTTAGGCGATCAGTATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:1512127/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:35608/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:1619800/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:169133/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:174301/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:191129/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:259481/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:283393/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:323557/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:329562/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:333250/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:1079411/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:430762/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:438662/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:452705/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:456901/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:466168/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:610305/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:750067/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:762508/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:911839/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:1550218/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:1018367/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:1138634/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:1175004/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:1259422/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:1275780/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:130505/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:1319532/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:1321266/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:136580/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:137688/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:1397347/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:1415794/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:1420520/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:1438657/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:1495493/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:1519242/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:1527781/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa  >  1:1539694/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCATCCGGTGCaa  >  1:365962/1‑62 (MQ=255) tGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGAACCCTCCGGTGCaa  >  1:1619315/1‑62 (MQ=255)                                                              | TGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCAA  >  W3110S.gb/200398‑200459

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑