Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	564721	564942	222	44 [0]	[0] 57	intD	predicted integrase

CTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGTT  >  W3110S.gb/564659‑564720                                                              | cTTGTTTCTGACTGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:964293/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:579753/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:307675/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:308277/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:322123/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:3317/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:389096/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:395331/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:469568/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:506932/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:516497/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:527286/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:284401/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:648187/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:684132/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:685159/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:730700/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:749076/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:777290/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:795277/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:895511/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:990980/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:217113/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:1050453/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:1080094/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:1115046/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:1162480/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:1198425/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:1210140/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:1233829/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:1298081/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:1333878/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:1376457/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:1426443/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:1492080/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:1508909/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:1510823/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:1559151/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:1559265/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:1598215/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:182325/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGtt  >  1:1025636/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTACAGTCGCGtt  >  1:1302359/1‑62 (MQ=255) cTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTCCCAGCCACTTCCAGTCGCGtt  >  1:1371675/1‑62 (MQ=255)                                                              | CTTGTTTCTGACCGCTGGTATCTTGATGACAGGCGCTTTTTCCAGCCACTTCCAGTCGCGTT  >  W3110S.gb/564659‑564720

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑