Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	600091	600152	62	58 [0]	[0] 107	cusA	copper/silver efflux system, membrane component

GCAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTG  >  W3110S.gb/600030‑600090                                                             | gaaaaTTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:1234242/59‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:790511/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:41119/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:427217/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:430403/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:461921/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:510691/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:564061/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:565574/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:635872/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:653782/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:718616/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:769987/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:77083/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:778687/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:782032/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:402987/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:831563/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:840910/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:851934/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:863587/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:892318/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:899772/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:906887/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:949596/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:95472/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:970602/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:974548/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:97843/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:1425064/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:1069985/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:1113522/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:1169292/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:1194814/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:123982/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:1311125/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:1313353/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:1324086/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:1341522/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:135283/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:140096/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:1421830/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:1422611/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:1020713/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:1484328/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:1504591/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:1515217/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:161132/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:1632949/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:174446/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:228219/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:258555/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:269018/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:310924/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:324008/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:333198/60‑1 (MQ=255)  cAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGACTg  <  1:1398977/60‑1 (MQ=255)                    cgAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTg  <  1:476481/42‑1 (MQ=255)                                                             | GCAAATTGAAGAAGTAGCGCGAACGGTGCCAGGCGTAGCTTCTGCGCTTGCCGAGCGGCTG  >  W3110S.gb/600030‑600090

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑