Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1085976	1085995	20	57 [0]	[0] 25	phoH	conserved hypothetical protein with nucleoside triphosphate hydrolase domain

GCTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCGG  >  W3110S.gb/1085914‑1085975                                                              | gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:676848/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:1393912/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:140876/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:88616/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:850669/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:1603603/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:84202/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:762827/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:18245/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:1404893/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:663958/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:621207/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:257791/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:574282/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:407836/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:442042/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:532190/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:990628/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:1389127/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:1265499/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:907515/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:123157/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:1390869/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:1225423/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:1152564/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:950360/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:952516/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:11222/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:1106978/62‑1 (MQ=255) gcTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCACCGCAGCAAAAGCgg  <  1:1289057/62‑1 (MQ=255)  cTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:691993/61‑1 (MQ=255)  cTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:977547/61‑1 (MQ=255)  cTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:959144/61‑1 (MQ=255)  cTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:739074/61‑1 (MQ=255)  cTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:904325/61‑1 (MQ=255)  cTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:1054774/61‑1 (MQ=255)  cTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:36286/61‑1 (MQ=255)  cTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:1053364/61‑1 (MQ=255)  cTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:1085430/61‑1 (MQ=255)  cTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:1101990/61‑1 (MQ=255)  cTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:1127328/61‑1 (MQ=255)  cTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:1128969/61‑1 (MQ=255)  cTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:1244518/61‑1 (MQ=255)  cTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:1441494/61‑1 (MQ=255)  cTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:1606196/61‑1 (MQ=255)  cTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:1637239/61‑1 (MQ=255)  cTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:168715/61‑1 (MQ=255)  cTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:234892/61‑1 (MQ=255)  cTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:257153/61‑1 (MQ=255)   tGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:225249/60‑1 (MQ=255)      tatTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:951886/57‑1 (MQ=255)                 ggCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:179803/46‑1 (MQ=255)                 ggCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:564808/46‑1 (MQ=255)                   cGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:1267887/44‑1 (MQ=255)                    gAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:144387/43‑1 (MQ=255)                       gCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:859937/40‑1 (MQ=255)                        ccGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCgg  <  1:90664/39‑1 (MQ=255)                                                              | GCTGATATTCGCCACGGGCGAAGCCGGGTGCGGAAAAACCTGGATCAGCGCAGCAAAAGCGG  >  W3110S.gb/1085914‑1085975

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑