Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1134318	1134522	205	44 [0]	[0] 31	flgE	flagellar hook protein

CGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCGG  >  W3110S.gb/1134282‑1134317                                    | cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:584712/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:1008471/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:178381/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:216458/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:245329/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:254466/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:33787/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:347339/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:350070/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:412730/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:487389/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:1643694/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:592072/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:672101/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:690631/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:788540/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:789283/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:811573/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:879706/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:906288/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:909281/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:1252181/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:1018553/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:1028241/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:1055334/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:107625/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:108842/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:1137352/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:1147193/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:1178235/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:1196062/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:1204197/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:1643077/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:129761/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:129893/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:1306175/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:1327299/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:1402966/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:1409591/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:141135/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:1602664/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCgg  >  1:1603265/1‑36 (MQ=255) cGGTTCGAAAGTGGGACTGGGGGTAAAAGGTGCCgg  >  1:487978/1‑36 (MQ=255) cGGTTCGAAAGAGGGACTGGGGGTAAAAGTTGCCgg  >  1:282270/1‑36 (MQ=255)                                    | CGGTTCGAAAGTGGGACTGGGGGTAAAAGTTGCCGG  >  W3110S.gb/1134282‑1134317

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑