Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1141811	1142085	275	14 [0]	[0] 85	flgL	flagellar hook‑filament junction protein

CACAAGCCGTAGTTCTCTCCCAGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACT  >  W3110S.gb/1141749‑1141810                                                              | cacaAGCCGTAGTTCTCTCCCAGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACt  >  1:1021953/1‑62 (MQ=255) cacaAGCCGTAGTTCTCTCCCAGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACt  >  1:1162731/1‑62 (MQ=255) cacaAGCCGTAGTTCTCTCCCAGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACt  >  1:1548758/1‑62 (MQ=255) cacaAGCCGTAGTTCTCTCCCAGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACt  >  1:244206/1‑62 (MQ=255) cacaAGCCGTAGTTCTCTCCCAGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACt  >  1:316689/1‑62 (MQ=255) cacaAGCCGTAGTTCTCTCCCAGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACt  >  1:416221/1‑62 (MQ=255) cacaAGCCGTAGTTCTCTCCCAGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACt  >  1:479286/1‑62 (MQ=255) cacaAGCCGTAGTTCTCTCCCAGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACt  >  1:570815/1‑62 (MQ=255) cacaAGCCGTAGTTCTCTCCCAGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACt  >  1:693282/1‑62 (MQ=255) cacaAGCCGTAGTTCTCTCCCAGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACt  >  1:718108/1‑62 (MQ=255) cacaAGCCGTAGTTCTCTCCCAGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACt  >  1:731109/1‑62 (MQ=255) cacaAGCCGTAGTTCTCTCCCAGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACt  >  1:773984/1‑62 (MQ=255) cacaAGCCGTAGTTCTCTCCCAGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACt  >  1:783906/1‑62 (MQ=255) cacaAGCCGTAGTTCTCTCCCAGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACt  >  1:837088/1‑62 (MQ=255)                                                              | CACAAGCCGTAGTTCTCTCCCAGGCACAGGCGCAAAACAGCCAGTACACGCTGGCGCGTACT  >  W3110S.gb/1141749‑1141810

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑