Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1146688	1146736	49	42 [0]	[0] 20	rluC	23S rRNA pseudouridylate synthase

TGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGAA  >  W3110S.gb/1146626‑1146687                                                              | tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:820160/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:426222/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:1003698/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:542138/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:543217/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:569763/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:631156/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:689218/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:767702/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:77064/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:513169/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:840060/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:84648/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:937323/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:95555/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:961966/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:963383/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:970343/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:994942/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:226786/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:1262729/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:1197615/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:1305115/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:1352485/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:1380827/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:1416120/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:141620/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:1425831/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:1081441/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:1538703/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:1566439/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:1630776/62‑1 (MQ=255) tGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:1634050/62‑1 (MQ=255)  gATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:1451782/61‑1 (MQ=255)  gATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:952160/61‑1 (MQ=255)   aTTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:842995/60‑1 (MQ=255)   aTTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGGGAACAAAAAACGTATTAAGCCTGaa  <  1:473966/60‑1 (MQ=255)     ttACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:1152132/58‑1 (MQ=255)     ttACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:678673/58‑1 (MQ=255)                           gAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:110245/36‑1 (MQ=255)                            aaGTGCGGGTGAAGAAAAAACGTATTAAGCCTGaa  <  1:1027283/35‑1 (MQ=255)                            aaGTGCGGGTGAACAAAAAACGTATTAAGCCTGaa  <  1:8918/35‑1 (MQ=255)                                                              | TGATTTACCGTATTTTGCGTAAAGGCGAAGTGCGGGTGAACAAAAAACGTATTAAGCCTGAA  >  W3110S.gb/1146626‑1146687

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑