Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1188797	1188960	164	44 [0]	[0] 133	ycfD	conserved hypothetical protein

CGCGAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAGCG  >  W3110S.gb/1188735‑1188796                                                              | cgcgAGCATCGCGAGGAATGACTGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:104446/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:721337/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:439022/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:46268/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:493802/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:513470/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:52439/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:544599/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:545690/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:565386/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:68103/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:1009022/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:723160/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:723535/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:730611/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:815015/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:878837/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:913696/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:925180/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:931736/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:320875/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:1002452/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:1139227/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:1143859/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:1185846/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:1220763/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:1231420/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:124925/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:132674/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:1489559/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:1587741/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:1601330/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:241983/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:256211/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:329294/62‑1 (MQ=255) cgcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGGCAgcg  <  1:1538185/62‑1 (MQ=255) cgcgAGCATCGCGAGGAAGGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:94735/62‑1 (MQ=255) cgcgAGCATCGCGAGGAAGGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:96785/62‑1 (MQ=255) cgcgAGCATCCCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:1096787/62‑1 (MQ=255)  gcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:749144/61‑1 (MQ=255)  gcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:1030666/61‑1 (MQ=255)  gcgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:933482/61‑1 (MQ=255)   cgAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:618154/60‑1 (MQ=255)                      cGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAgcg  <  1:1401486/41‑1 (MQ=255)                                                              | CGCGAGCATCGCGAGGAATGACGGATCTTCCAGCGCATCGCCAAAATTCTCCGCAGTCAGCG  >  W3110S.gb/1188735‑1188796

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑