Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1191359	1191564	206	67 [0]	[1] 27	phoP	DNA‑binding response regulator in two‑component regulatory system with PhoQ

AACAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAGCG  >  W3110S.gb/1191298‑1191358                                                             | aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:569589/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:7529/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:750342/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:736472/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:735377/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:73496/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:714462/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:709452/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:572580/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:765023/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:53817/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:537595/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:506018/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:50298/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:470088/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:45654/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:435535/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:434952/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:814068/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:826759/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:838580/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:849422/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:857797/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:871013/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:871095/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:884136/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:9034/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:928458/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:92933/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:963878/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:973831/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:997221/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:998822/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:1139484/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:1023585/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:1465842/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:138547/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:1311597/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:130595/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:130463/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:1258152/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:1235229/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:147732/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:113543/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:111663/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:11054/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:1094510/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:1079108/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:1051465/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:1048397/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:229718/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:423056/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:410147/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:37693/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:366869/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:36464/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:336072/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:231071/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:1539400/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:228687/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:219564/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:200412/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:166196/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:1651361/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:1540838/61‑1 (MQ=255) aaCAGAAAACGTACCCGCAGCGAGAGCCGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:293291/61‑1 (MQ=255)        aaCGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAgcg  <  1:77415/54‑1 (MQ=255)                                                             | AACAGAAAACGTACCCGCAGCGAGAGCGGGAAAAAAAGACGCAGTAATTTTTTCATCAGCG  >  W3110S.gb/1191298‑1191358

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑