Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1201953	1202176	224	73 [0]	[0] 13	intE	predicted integrase

CTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCG  >  W3110S.gb/1201891‑1201952                                                              | ctTTGAAAATATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:241726/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:467851/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:621942/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:613492/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:600401/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:590300/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:586537/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:54025/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:517138/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:471210/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:626770/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:409492/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:398661/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:391909/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:361542/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:336723/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:1008370/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:282307/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:786443/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:97486/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:968318/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:962989/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:941121/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:938679/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:910876/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:845240/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:806676/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:286988/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:726293/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:711545/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:710552/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:706112/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:679460/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:653506/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:629105/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:1224008/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:1467568/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:1366235/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:1334708/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:1311132/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:1262719/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:1258772/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:1251447/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:1224090/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:265919/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:1219370/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:1210378/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:1186143/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:1129281/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:1118422/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:1102910/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:1100882/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:1082075/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:1530601/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:1587006/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:1469214/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:1616609/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:1621644/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:281613/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:167568/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:186908/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:259552/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:213259/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:253495/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:213533/62‑1 (MQ=255) ctTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:221738/62‑1 (MQ=255)  tttGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:1034798/61‑1 (MQ=255)  tttGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:297644/61‑1 (MQ=255)  tttGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:445287/61‑1 (MQ=255)  tttGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:1601688/61‑1 (MQ=255)               atcaGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:515375/48‑1 (MQ=255)                        gAGCGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:755464/39‑1 (MQ=255)                           cGAACTACTTGTGCCATTCTTGGCCGCCCAgcggcg  <  1:84254/36‑1 (MQ=255)                                                              | CTTTGAAAACATCAATCAGGACGGAGCGAACTACTTGTGCCATTCTTGGCCGCCCAGCGGCG  >  W3110S.gb/1201891‑1201952

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑