Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1416209	1416265	57	41 [0]	[0] 27	recT	recombination and repair protein

AGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGT  >  W3110S.gb/1416147‑1416208                                                              | aGCCAGTGATTAGCTGAACGTTCTTTTTACCGCTCTTATCGTTTTTATTACCAAAAGGCAGt  <  1:631318/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:685912/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:1057596/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:205150/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:317660/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:385161/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:440703/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:553800/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:671999/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:685313/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:1647153/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:71853/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:752644/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:766055/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:766873/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:775337/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:854645/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:932959/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:945401/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:1616891/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:1141989/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:1172478/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:1186787/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:1199630/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:1317854/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:1369479/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:1384268/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:1396531/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:1461052/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:1514229/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:1521846/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:1551278/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:1580548/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:1594380/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:1609725/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:1620923/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACAAAAAGGCAGt  <  1:1408312/62‑1 (MQ=255) aGCCAATGATTAGCTGAACGGTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:450418/62‑1 (MQ=255)  gCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:32565/61‑1 (MQ=255)                 aaCGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:620907/46‑1 (MQ=255)                         ttttACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGt  <  1:1478820/38‑1 (MQ=255)                                                              | AGCCAATGATTAGCTGAACGTTCTTTTTACCGCTCTTTTCGTTTTTATTACCAAAAGGCAGT  >  W3110S.gb/1416147‑1416208

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑