Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1640098	1640143	46	79 [0]	[0] 21	ynfN/cspI	hypothetical protein/cold shock protein

ACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAG  >  W3110S.gb/1640057‑1640097                                         | aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:521989/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:595590/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:595421/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:57472/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:573560/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:571545/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:554640/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:554441/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:546175/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:544223/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:627656/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:515854/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:513166/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:474317/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:434760/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:425202/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:414286/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:402833/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:398683/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:341951/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:83063/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:995065/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:943613/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:924469/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:922402/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:907303/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:874396/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:873566/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:872262/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:855805/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:31477/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:82723/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:7977/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:746642/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:733474/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:712688/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:706972/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:699715/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:67875/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:676615/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1184036/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1448485/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1417660/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1412469/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:136917/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1367406/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1312159/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1305114/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1288548/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:123443/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:145991/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1167483/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1162980/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1145972/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1131787/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1112821/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:107194/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1070902/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1035855/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1013848/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1612866/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:308603/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:274714/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:243912/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:230536/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:218986/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:209827/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:191862/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:177319/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1632224/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1008453/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1599613/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1590845/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1582225/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1548948/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1538007/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1530389/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1518094/41‑1 (MQ=255) aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAg  <  1:1491065/41‑1 (MQ=255)                                         | ACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAG  >  W3110S.gb/1640057‑1640097

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑