Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1653449	1654084	636	36 [1]	[0] 8	intQ	predicted defective integrase

TGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAACACATA  >  W3110S.gb/1653392‑1653452                                                         |     tGGCTGAAAAATTTCTGGCTCTGAAAGAAACTGAAGTCGCCAAAACATCACTCAACACATa  >  1:1130485/1‑61 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:267433/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:995095/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:269775/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:317488/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:344797/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:34511/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:460623/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:476949/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:485545/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:489469/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:58694/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:617159/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:690082/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:708871/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:914750/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:932548/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:103380/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:1375531/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:1133960/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:1157200/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:1247625/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:1270809/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:1323049/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:1366905/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:240339/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:1402208/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:1529228/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:1539872/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:1564908/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:1651334/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:194711/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:236393/1‑57 (MQ=255) tGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:239799/1‑57 (MQ=255) tGGCTGAAAAATTTCTCGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:130126/1‑57 (MQ=255) tGGCTGAAAAATTTATGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAaca      >  1:610728/1‑57 (MQ=255)                                                         |     TGGCTGAAAAATTTCTGGCACTGAAAGAAACTGAAGTCGCCAAAACATCACTCAACACATA  >  W3110S.gb/1653392‑1653452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑