Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1978251	1978563	313	41 [0]	[0] 26	motA	proton conductor component of flagella motor

GGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAT  >  W3110S.gb/1978189‑1978250                                                              | ggggAAATAAATCCGTAAGCCATTAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:261389/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAACTGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:887235/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:607351/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:303358/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:368255/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:368499/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:409236/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:431195/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:49130/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:502542/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:512004/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:5529/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:286838/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:683020/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:713271/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:744788/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:762361/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:779288/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:825424/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:952248/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:979658/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:152236/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:1148047/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:1160469/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:1243317/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:1293197/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:1295383/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:1353569/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:1442716/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:1442816/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:1099982/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:1525170/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:1527340/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:1530806/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:1536642/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:1547544/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:1602382/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:1635238/62‑1 (MQ=255) ggggAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:164581/62‑1 (MQ=255)       ataaatCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:503782/56‑1 (MQ=255)                        tAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAt  <  1:1240451/39‑1 (MQ=255)                                                              | GGGGAAATAAATCCGTAAGCCAATAAAATGCCGAGGAAAGTCCCCACCATCGCATGTGCGAT  >  W3110S.gb/1978189‑1978250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑