Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2099524	2099564	41	32 [0]	[5] 6	cld	regulator of length of O‑antigen component of lipopolysaccharide chains

TCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCACC  >  W3110S.gb/2099463‑2099523                                                             | tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:169748/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:873666/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:870181/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:869575/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:760422/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:759576/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:735926/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:729335/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:539211/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:531497/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:412736/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:299775/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:244174/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:183341/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:182393/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:100451/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:1577328/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:1523689/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:1473533/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:1458363/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:1371897/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:1353775/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:123966/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:1222831/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:1194288/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:1192036/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:1160009/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:1089043/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:1054651/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:1033358/61‑1 (MQ=255) tCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:1033302/61‑1 (MQ=255)  cgcgTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCAcc  <  1:547775/60‑1 (MQ=255)                                                             | TCGCGTTGTAATTGCGTAGAGCATTACGCCCCAGCACAATCCCCGCGCCAACCATGCCACC  >  W3110S.gb/2099463‑2099523

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑