Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2440332	2440872	541	45 [0]	[0] 98	truA	pseudouridylate synthase I

TAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAT  >  W3110S.gb/2440271‑2440331                                                             | tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:754871/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:503453/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:504272/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:507036/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:527659/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:570794/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:637351/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:639315/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:652484/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:711398/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:730081/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:1113275/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:867925/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:870889/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:871194/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:881624/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:891293/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:89502/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:93105/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:943463/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:958240/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:235660/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:1403693/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:1244414/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:142028/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:142558/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:1455223/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:1503234/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:156317/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:1593268/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:244767/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:268240/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:296793/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:36485/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:1179123/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:391797/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:108464/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:442492/61‑1 (MQ=255) tAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:48741/61‑1 (MQ=255) tAGACCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:1610662/61‑1 (MQ=255)  aGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:994721/60‑1 (MQ=255)  aGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:892576/60‑1 (MQ=255)       gCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:549901/55‑1 (MQ=255)                    ggCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:442948/42‑1 (MQ=255)                        cATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAt  <  1:442019/38‑1 (MQ=255)                                                             | TAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAAT  >  W3110S.gb/2440271‑2440331

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑