Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2451897	2451980	84	79 [0]	[0] 28	aroC	chorismate synthase

ACCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATC  >  W3110S.gb/2451836‑2451896                                                             | aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:36153/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:640097/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:569560/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:552976/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:549369/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:544296/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:45808/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:427870/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:367462/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:680765/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:343716/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:332988/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:330097/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:296296/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:290320/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:283918/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1012784/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:171572/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:823714/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:996095/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:995602/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:964714/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:948891/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:947058/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:901172/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:893464/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:857181/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:19179/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:800930/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:798215/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:784531/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:779866/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:768256/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:718098/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:715962/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:692146/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:114708/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1322635/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1314370/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1300174/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1289554/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1243350/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1233662/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1215313/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1180689/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1330015/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1100834/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:109205/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1091908/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1076981/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1070768/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1051760/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1040626/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:159694/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:153293/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1502731/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1470531/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1459291/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:153832/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1456685/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1420384/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1379884/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1371261/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1602451/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1602571/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1631982/61‑1 (MQ=255) aCCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1360916/61‑1 (MQ=255)  ccAGCGTGGAATATCAGTCTTCACATCGTCATTTTGCGCCGGTTGCCGTAACAGGTGATc  <  1:1507440/60‑1 (MQ=255)  ccAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:562281/60‑1 (MQ=255)  ccAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:994110/60‑1 (MQ=255)  ccAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:77366/60‑1 (MQ=255)  ccAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:538396/60‑1 (MQ=255)  ccAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:649346/60‑1 (MQ=255)  ccAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1646576/60‑1 (MQ=255)  ccAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:628959/60‑1 (MQ=255)  ccAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:133285/60‑1 (MQ=255)    aGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1076475/58‑1 (MQ=255)    aGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:1073723/58‑1 (MQ=255)    aGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATc  <  1:165373/58‑1 (MQ=255)                                                             | ACCAGCGTGGAATATCAGTCTTCACATCGGCATTTTGCGCCCGTTGCCGTAACAGGTGATC  >  W3110S.gb/2451836‑2451896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑