Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2741553	2741817	265	42 [0]	[0] 21	yfiN	predicted diguanylate cyclase

ATCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAG  >  W3110S.gb/2741492‑2741552                                                             | aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:614780/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:248196/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:357032/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:386304/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:45548/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:459464/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:466904/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:479403/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:573253/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:575227/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:347600/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:662007/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:68334/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:72663/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:785878/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:793821/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:838729/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:913312/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:952890/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:1322315/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:1046015/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:1059085/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:1069984/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:1087976/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:108840/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:1118500/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:1130693/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:1241354/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:1255613/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:1256393/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:232910/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:1385159/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:1442221/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:1532521/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:1557027/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:225292/61‑1 (MQ=255) aTCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:227292/61‑1 (MQ=255)  tCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:559665/60‑1 (MQ=255)  tCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:682482/60‑1 (MQ=255)  tCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:1619366/60‑1 (MQ=255)                       cgctcgcCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:1005973/39‑1 (MQ=255)                         ctcgcCGTACTGACCGGTTGTATTCTGCTGGCATCAg  <  1:41135/37‑1 (MQ=255)                                                             | ATCAGCCATTTTATCTGGTTTTCGCTCGCCGTACTGACCGGTTGTATTCTGCTGGCATCAG  >  W3110S.gb/2741492‑2741552

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑