Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2865328	2865354	27	69 [0]	[0] 9	rpoS	RNA polymerase, sigma S (sigma 38) factor

CGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTT  >  W3110S.gb/2865267‑2865327                                                             | cgcAACCGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:1029032/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTTGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:1316121/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:555658/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:627373/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:610421/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:603824/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:588806/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:58171/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:581619/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:577964/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:560944/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:712302/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:542519/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:522642/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:517373/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:472987/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:458250/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:421630/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:376236/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:843078/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:969611/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:923725/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:911031/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:891337/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:881681/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:866041/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:865919/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:859943/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:635375/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:82947/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:8154/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:809255/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:746877/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:731753/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:714081/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:330467/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:1429513/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:10101/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:1033944/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:1065551/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:1139998/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:1218389/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:1219896/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:1243063/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:1268438/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:1291551/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:1331652/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:1334049/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:1344500/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:1378325/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:1389643/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:33751/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:234638/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:1007832/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:328665/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:302486/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:285717/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:280592/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:253944/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:1538144/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:198782/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:181831/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:163504/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:1578223/61‑1 (MQ=255) cgcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:1569670/61‑1 (MQ=255)  gcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:1180472/60‑1 (MQ=255)  gcAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:1559567/60‑1 (MQ=255)       cGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:1159579/55‑1 (MQ=255)                           aaTCTGGCGAACACGTTCACGGGTGAGGCCAAttt  <  1:184921/35‑1 (MQ=255)                                                             | CGCAAACGGCGCAGGCCTTCAACCTGAATCTGGCGAACACGTTCACGGGTGAGGCCAATTT  >  W3110S.gb/2865267‑2865327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑