Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3066598	3066606	9	88 [0]	[0] 43	yggE	conserved hypothetical protein

CTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCAA  >  W3110S.gb/3066536‑3066597                                                              | cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGGGGCCACGTTAACTTCAATCGCaa  <  1:1173908/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:245978/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:373149/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:372642/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:340261/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:327377/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:320891/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:303601/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:29001/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:262736/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:391858/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:220973/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:219443/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:869208/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:193587/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:189402/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:173758/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:884821/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1644010/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:603054/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:807597/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:782566/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:751080/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:739290/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:700934/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:646642/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:636940/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:61132/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:863220/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:495135/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:853993/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:855940/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:479831/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:857271/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:41429/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:41113/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1556687/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1167007/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:885369/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:920229/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1269697/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1254523/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1254074/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1237127/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1203883/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1193562/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1298210/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1150450/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1133955/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1123255/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:998238/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1087715/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1085461/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1052966/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1042961/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1428400/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1500081/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1493618/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:149323/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:906032/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1471312/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1451677/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1531673/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1439007/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1302008/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1413077/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1396397/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1384264/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1361592/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1344863/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1333136/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1306541/62‑1 (MQ=255) cTCATCTGCCTGTTTCTTGGAAGTAGCGGCATACTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1226608/62‑1 (MQ=255)  tCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1049833/61‑1 (MQ=255)  tCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:821251/61‑1 (MQ=255)  tCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:835079/61‑1 (MQ=255)  tCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:60502/61‑1 (MQ=255)  tCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:576895/61‑1 (MQ=255)  tCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:490617/61‑1 (MQ=255)  tCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:485137/61‑1 (MQ=255)  tCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:430513/61‑1 (MQ=255)  tCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:373443/61‑1 (MQ=255)  tCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1651735/61‑1 (MQ=255)  tCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:15512/61‑1 (MQ=255)  tCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1488847/61‑1 (MQ=255)  tCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:12902/61‑1 (MQ=255)  tCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:1096478/61‑1 (MQ=255)                   ggCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCaa  <  1:195048/44‑1 (MQ=255)                                                              | CTCATCTGCCTGTTTCTTGGCAGTAGCGGCATCCTTCGCGGCCACGTTAACTTCAATCGCAA  >  W3110S.gb/3066536‑3066597

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑