Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3089898	3090034	137	38 [0]	[0] 33	yggJ	hypothetical protein

CTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCG  >  W3110S.gb/3089836‑3089897                                                              | ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:35382/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:993935/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:972940/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:910222/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:872063/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:863745/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:74502/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:596931/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:596813/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:549979/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:523159/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:468751/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:46148/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:385683/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:1098217/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:349763/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:253259/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:234953/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:1113585/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:112227/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:1551673/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:1141926/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:1547781/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:1241947/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:1390041/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:1387711/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:1307937/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:1351638/62‑1 (MQ=255) ctcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:1328564/62‑1 (MQ=255) ctcACATCGCGATTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:318302/62‑1 (MQ=255)  tcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:795481/61‑1 (MQ=255)  tcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:141896/61‑1 (MQ=255)  tcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:989983/61‑1 (MQ=255)  tcACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:1563907/61‑1 (MQ=255)          cgcTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:557712/53‑1 (MQ=255)           gcTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:1247438/52‑1 (MQ=255)           gcTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:381041/52‑1 (MQ=255)                        gccgccAACCATATCGGGCGCGTACTGCGCATGGGGCCg  <  1:395678/39‑1 (MQ=255)                                                              | CTCACATCGCGCTTTGCGAAGATGCCGCCAACCATATCGGGCGCGTACTGCGCATGGGGCCG  >  W3110S.gb/3089836‑3089897

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑