Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3195028	3195417	390	39 [0]	[0] 15	[rfaE]	[rfaE]

CACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCAA  >  W3110S.gb/3194966‑3195027                                                              | cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGGTGCGGATCaa  >  1:433025/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGTATCaa  >  1:614074/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:720985/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:426520/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:463911/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:479880/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:555030/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:591113/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:602963/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:635844/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:386341/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:745760/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:788523/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:817971/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:836211/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:931179/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:940561/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:961663/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:983344/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:984065/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:1577452/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:1031202/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:1071293/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:1134920/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:1183671/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:1243418/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:1375524/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:1479937/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:1549870/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:1027744/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:1580138/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:158826/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:1617330/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:1623089/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:24794/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:285383/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:321139/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:368521/1‑62 (MQ=255) cACCAGCGCGCCAATCGAACTCACAGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCaa  >  1:1284684/1‑62 (MQ=255)                                                              | CACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCAA  >  W3110S.gb/3194966‑3195027

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑