Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3285226	3285265	40	30 [0]	[0] 67	agaC	N‑acetylgalactosamine‑specific enzyme IIC component of PTS

GCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGA  >  W3110S.gb/3285266‑3285315 |                                                  gCGAAATCCCGGCAGCTAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:1188260/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGGAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:127450/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAAtaa  <  1:1182676/50‑3 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:368116/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:516923/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:515501/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:446944/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:445568/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:437969/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:402853/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:389024/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:387853/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:692967/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:352675/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:343354/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:330583/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:320462/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:316161/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:303611/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:553958/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:581654/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:257104/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:724362/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:72975/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:743558/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:753499/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:760239/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:768096/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:864283/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:879678/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:891468/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:896670/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:914118/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:961495/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:983804/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:1450906/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:1073809/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:1141279/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:1216184/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:1224098/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:1224664/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:1228157/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:1232077/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:1242680/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:124314/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:1268475/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:1278852/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:1311175/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:1361809/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:1385537/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:144380/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:286482/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:1466648/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:1527046/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:1528425/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:1552267/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:1568460/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:1588970/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:1618565/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:1629941/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:1647554/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:1648544/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:174051/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:19826/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:227207/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:1050558/50‑1 (MQ=255) gCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATga  <  1:274736/50‑1 (MQ=255) |                                                  GCGAAATCCCGGCAGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGA  >  W3110S.gb/3285266‑3285315

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑