Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	3540686	3540730	45	125 [0]	[0] 71	[rhaB]–[rhaA]	[rhaB],[rhaA]

AGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGGCG  >  W3110S.gb/3540731‑3540776 |                                              aGCGAACCAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:543232/46‑1 (MQ=255) aGCGAAACATCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:907523/46‑1 (MQ=255) aGCGAAACATCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1561022/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:287292/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:564232/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:483899/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:446283/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:423320/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:345727/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:331467/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:307230/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:305724/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:639448/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:281495/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:233319/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:169617/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:167390/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1636000/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1619140/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:777414/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:981631/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:936124/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:934113/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:915971/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:909224/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:896370/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:88327/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:850786/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:159873/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:776375/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:770698/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:744111/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:709054/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:668259/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:661018/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:657586/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1248220/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1327358/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1325531/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1324647/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1318368/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:130623/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1268261/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1261085/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1257806/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1329198/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1212598/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1194422/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1176919/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1139056/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1133156/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1123509/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1110841/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:106202/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1483647/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1006416/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1594783/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:158352/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:158257/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1573251/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1547197/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1493766/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1492738/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1601543/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1481951/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1456270/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1405454/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1355882/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1353004/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1351065/46‑1 (MQ=255) aGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGgcg  <  1:1337031/46‑1 (MQ=255) |                                              AGCGAAACAGCGTTTCGCGGCGGTGGGGATTGATGTCGAGGAGGCG  >  W3110S.gb/3540731‑3540776

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑