Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	60294	60294	1	33 [0]	[0] 76	rluA	pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32)

ACAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTC  >  W3110S.gb/60295‑60355 |                                                             aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCGATCCCCATTTTCGGCTc  <  1:438578/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCGTTTTCGGCTc  <  1:797035/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:643239/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:668175/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:578777/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:549210/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:545576/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:522530/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:493435/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:484739/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:478839/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:408628/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:408025/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:39054/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:370421/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:369612/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:322579/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:322253/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:315006/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:287197/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:84915/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:997035/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:996762/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:992681/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:9506/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:940416/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:888948/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:88513/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:877886/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:28659/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:817759/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:815652/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:804280/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:758997/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:734424/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:696501/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:685491/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:683479/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1140701/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1343590/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1339058/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1336692/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1277803/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1251766/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1251134/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1201573/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1200574/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1146685/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:284607/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1128182/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1080862/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1080324/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1076691/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1069242/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1061694/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1032837/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1008252/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1578961/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1000869/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:239008/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:235227/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:230684/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:176767/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:16556/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:165445/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1603761/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1577014/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1571682/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1538133/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1426402/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1411916/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1404165/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1386668/61‑1 (MQ=255) aCAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1378652/61‑1 (MQ=255) aCAGGATAACCAACCAGGATTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:1351452/61‑1 (MQ=255) aCAAGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTc  <  1:25475/61‑1 (MQ=255) |                                                             ACAGGATAACCAACCAGGGTTCCTGCGGTGGATTGTAGTTTTCCATCCCCATTTTCGGCTC  >  W3110S.gb/60295‑60355

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑