Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4080904	4081838	935	46 [0]	[0] 78	rtcR	sigma 54‑dependent transcriptional regulator of rtcBA expression

TTCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAT  >  W3110S.gb/4081839‑4081900 |                                                              ttCTTGCTGAAACTCGTAACCACGGGCGAAATCATGCaggcaggc                   >  1:600965/1‑45 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATgcag                         >  1:1476826/1‑39 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAg               >  1:1344335/1‑49 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGCCCTCTTCGaaa   >  1:599294/1‑61 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGaaa   >  1:92279/1‑61 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGaaa   >  1:318695/1‑61 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGaaa   >  1:1372002/1‑61 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGaaa   >  1:1306980/1‑61 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGaa    >  1:511006/1‑60 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:619459/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:655490/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:571201/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:558892/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:543114/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:529521/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:495415/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:465899/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:451651/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:403673/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:326585/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:320756/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:307383/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:300133/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:759167/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:981575/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:831016/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:826965/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:824380/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:801705/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:800424/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:780965/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:77986/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:625702/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:723274/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:667779/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:66518/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:659742/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:658074/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:274404/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:646193/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:628062/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1273687/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:150240/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:148300/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1482692/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1407501/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1400014/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1370821/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1302487/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1293716/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1288853/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1505361/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:126106/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1257106/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1221909/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1209355/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1183248/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1175994/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1037730/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1027109/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1640172/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1005217/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:257164/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:220210/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:192174/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:187502/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1649488/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:286190/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1631719/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1627745/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1588160/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1565363/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1563461/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1540982/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1534585/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAt  >  1:1509963/1‑62 (MQ=255) ttCTGGCTGAAACTCGTAACCACGGGCGAAATCAAGCAGGCAGGCGTAGACCTCTTCGaaa   >  1:181759/1‑61 (MQ=255) ttCTGGCTGAAACTAGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACATCTTCGAAAt  >  1:386079/1‑62 (MQ=255) |                                                              TTCTGGCTGAAACTCGTAACCACGGGCGAAATCATGCAGGCAGGCGTAGACCTCTTCGAAAT  >  W3110S.gb/4081839‑4081900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑