Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4142651	4142674	24	13 [0]	[0] 50	nirC	nitrite transporter

ATACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCCAC  >  W3110S.gb/4142675‑4142735 |                                                             aTACCAATATCCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:1089344/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:249712/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:981685/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:269463/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:30552/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:351155/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:409643/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:431972/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:440618/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:442813/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:506590/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:518957/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:531869/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:588247/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:616397/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:663412/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:693509/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:73839/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:740014/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:748486/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:756557/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:765611/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:795035/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:801158/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:857909/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:1014871/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:1383740/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:109347/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:111262/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:1173328/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:1197903/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:1201297/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:1226604/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:124751/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:1296751/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:131544/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:1321230/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:1350890/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:244122/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:139450/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:1407451/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:1443742/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:1465087/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:1486019/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:1518981/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:1531744/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:1551084/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:171935/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:203113/61‑1 (MQ=255) aTACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCcac  <  1:236730/61‑1 (MQ=255) |                                                             ATACCAATAACCCAATCCCATGAATACGGCACCTGATAAAGTATTACCCAGCGTCACCCAC  >  W3110S.gb/4142675‑4142735

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑