Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4186397	4186436	40	50 [0]	[0] 82	gspA	general secretory pathway component, cryptic

TATATCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGA  >  W3110S.gb/4186437‑4186498 |                                                              tataTCGGGATTAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:761286/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCTCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:494138/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:321763/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:495073/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:490007/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:479094/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:393314/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:373731/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:359317/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:346630/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:324018/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:601421/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:320024/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:309206/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:303701/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:252504/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:210886/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:183364/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:166062/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1639492/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:160024/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:8002/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:987015/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:961751/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:93638/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:928330/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:885691/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:87464/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:863019/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:816389/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:801946/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:532092/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:787286/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:733355/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:717088/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:704368/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:672957/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:663891/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:645028/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:64369/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1568607/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1179561/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1310550/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1289447/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1254988/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1230653/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1228300/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1218936/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1216187/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:121195/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1193899/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1190896/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1320320/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1158179/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1141368/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1092426/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1091384/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1053310/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1040692/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1035923/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1031970/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1027330/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1396255/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1550294/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1529729/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1515018/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:150777/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1469708/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1446424/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1423493/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1419019/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1405165/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1007738/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1394433/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1373966/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1372845/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1371008/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1359376/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1342855/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:133569/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1327860/62‑1 (MQ=255) tataTCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGa  <  1:1323320/62‑1 (MQ=255) |                                                              TATATCGGGATGAAGCAAATATTTCCCCGGAAACAACAGTGAAGGGGAAATGACATGTTTGA  >  W3110S.gb/4186437‑4186498

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑