Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	4200252	4200309	58	38 [0]	[0] 76	rpoA	RNA polymerase, alpha subunit

GCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGC  >  W3110S.gb/4200310‑4200363 |                                                      gCTTCCTGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:186235/1‑54 (MQ=255) gCTTCCGGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1418213/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACt                >  1:759942/1‑40 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCa     >  1:1403787/1‑51 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAg   >  1:864528/1‑53 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:473400/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:600671/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:586873/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:55510/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:52965/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:50382/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:493157/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:483235/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:643706/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:438862/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:438603/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:413238/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:410651/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:409615/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:402845/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:388389/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:793655/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:994531/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:958856/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:944297/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:900860/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:876291/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:872644/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:861694/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:819965/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:808198/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:601574/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:772432/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:77201/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:771879/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:680320/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:67985/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:666176/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:656528/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:296049/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1203222/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1365745/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1361581/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1307855/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1296088/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:124363/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1226410/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1215069/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1205415/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1368055/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1194320/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1187946/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1182383/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1164080/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1163096/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1148300/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1141759/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1109311/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1573320/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1082001/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:253420/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:246151/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:239766/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:189310/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1635646/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1622700/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1576214/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:38326/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1549916/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1543024/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1516535/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1446401/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1441394/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1381540/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1369095/1‑54 (MQ=255) gCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGc  >  1:1368629/1‑54 (MQ=255) |                                                      GCTTCCCGTGGACTGTCTCTGGGCATGCGCCTGGAAAACTGGCCACCGGCAAGC  >  W3110S.gb/4200310‑4200363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑