Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	559236	559284	49	26 [0]	[5] 59	sfmD	predicted outer membrane export usher protein

CGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGCC  >  W3110S.gb/559279‑559339       |                                                       cGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:452446/1‑61 (MQ=255) cGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:603615/1‑61 (MQ=255) cGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:625387/1‑61 (MQ=255) cGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1608284/1‑61 (MQ=255) cGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGcc  >  1:1629277/1‑61 (MQ=255)       aGCCCAGCAGCAAAACTATAAATGCATCAATTTACTGa                   <  1:294305/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGGATCAATTTACTGa                   <  1:122995/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCGATTTACTGa                   <  1:1615226/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:402468/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:409208/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:395007/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:416225/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:327220/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:319429/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:555760/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:474340/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:493179/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:543625/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:545680/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:1643075/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:559959/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:587368/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:665691/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:714919/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:738933/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:758271/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:81011/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:828643/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:867761/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:968406/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:973088/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:986342/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:1281387/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:1039757/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:1060946/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:1068670/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:1073031/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:1105118/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:110921/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:1148040/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:120075/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:1209644/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:121893/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:1224374/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:1240095/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:124820/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:315013/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:1291614/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:1311002/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:1342890/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:1372338/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:1466571/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:1469758/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:155803/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:1608339/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:1626834/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:1632893/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:1013445/38‑1 (MQ=255)       aGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGa                   <  1:199522/38‑1 (MQ=255)       |                                                       CGAGTTAGCCCAGCAGCAAAACAATAAATGCATCAATTTACTGAAAGCTGTACCTGATGCC  >  W3110S.gb/559279‑559339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑