Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1012489	1012692	204	133 [1]	[0] 48	pqiA	paraquat‑inducible membrane protein A

CTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCTG  >  W3110S.gb/1012693‑1012734 |                                          cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:651068/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:336024/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:411620/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:431284/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:444144/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:473059/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:517706/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:557613/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:583289/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:594333/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:604577/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:633148/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:259915/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:691539/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:694937/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:711531/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:739512/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:774814/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:811523/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:845069/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:856964/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:904871/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:933635/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:958822/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:1496792/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:1053105/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:1101666/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:1106211/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:1149424/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:1175357/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:128743/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:1342129/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:138029/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:1406602/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:1463426/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:1021126/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:1499789/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:150493/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:1515426/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:1520858/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:1546291/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:1565311/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:1604571/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:1606044/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:1611017/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:1628236/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCtg  <  1:234144/42‑1 (MQ=255) cTTTTTTCTGAGGACTACGCCAGCCTCGGCACCCTTTTCCtg  <  1:1107132/42‑1 (MQ=255) |                                          CTTTTTTCTGAGGACTACGCCAGCCTCGGCACCTTTTTCCTG  >  W3110S.gb/1012693‑1012734

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑