Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1099973	1100130	158	25 [0]	[0] 72	ycdY	conserved hypothetical protein

AGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAT  >  W3110S.gb/1100131‑1100192 |                                                              aGGGCGCGTCGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:959170/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGATCGAGGGATGCCATTAGCGGa   >  1:931799/1‑61 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGc                      >  1:1228449/1‑42 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCgg    >  1:371723/1‑60 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGa   >  1:988095/1‑61 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGa   >  1:43378/1‑61 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGa   >  1:1553197/1‑61 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGa   >  1:1422452/1‑61 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGa   >  1:656869/1‑61 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGa   >  1:778532/1‑61 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGa   >  1:813744/1‑61 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:552104/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:315280/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:380696/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:415663/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:416985/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:976740/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:444521/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:450706/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:461529/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:471108/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:498467/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:521212/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:5337/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:537037/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:579227/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:591555/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:957470/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:619225/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:621973/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:896756/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:634785/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:893581/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:666174/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:706787/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:725931/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:756389/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:852278/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:1264825/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:1412877/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:1357446/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:1338669/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:1327152/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:130852/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:1288590/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:1287128/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:1278094/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:1487624/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:1165293/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:11358/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:1133466/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:1114912/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:1045428/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:1033986/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:1025505/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:226108/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:1018373/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:311623/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:292773/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:290653/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:290335/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:271657/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:266198/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:247701/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:19984/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:169931/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:165121/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:1635329/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:1616566/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:1603307/1‑62 (MQ=255) aGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAt  >  1:154374/1‑62 (MQ=255) aGGGCGCGAAGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCAt          >  1:318319/1‑54 (MQ=255) |                                                              AGGGCGCGACGGAAGCGGAAGTGCGCGCTTTTCTTTCTGAGCGAGGGATGCCATTAGCGGAT  >  W3110S.gb/1100131‑1100192

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑