Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1139485	1140274	790	13 [0]	[0] 64	[flgJ]–[flgK]	[flgJ],[flgK]

AACACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGACCC  >  W3110S.gb/1140275‑1140334 |                                                            aaCACAGATGCATGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1213008/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:586896/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1000283/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:293169/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:314402/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:3327/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:353629/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:372869/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:396053/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:436012/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:439362/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:491214/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:513763/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:555775/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:558757/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:563727/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:573510/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:24411/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:621432/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:64238/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:691637/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:70944/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:751159/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:777744/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:781801/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:831319/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:833501/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:847361/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:856629/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:91567/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:975384/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1300608/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1012708/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1037513/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1069089/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1072179/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1121070/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1130148/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1149923/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1153299/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1154860/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1197744/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1200821/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1207730/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1237046/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1239368/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1297535/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1547929/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1612620/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1607889/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1604414/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1599567/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1598753/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1583097/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1549727/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:215107/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1461319/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1458121/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1411162/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAccc  >  1:1311720/1‑60 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAcca  >  1:745555/1‑59 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAcc   >  1:375745/1‑59 (MQ=255) aaCACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTCGTGAGTAACGCGGAAGAccc  >  1:505689/1‑60 (MQ=255) aaCACAGATGAAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGAcc   >  1:148777/1‑59 (MQ=255) |                                                            AACACAGATGCAGGATTTCTTCACCAGCCTGCAAACGCTGGTGAGTAACGCGGAAGACCC  >  W3110S.gb/1140275‑1140334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑