Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1535337	1535409	73	13 [0]	[0] 47	yddH	conserved hypothetical protein

CACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTACG  >  W3110S.gb/1535410‑1535466 |                                                         cACTCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:1293932/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:663343/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:35404/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:390227/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:396800/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:421146/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:429537/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:43206/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:43770/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:492314/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:574398/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:593340/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:628320/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:315085/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:674695/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:714303/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:727897/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:728425/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:757781/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:781634/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:794062/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:832129/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:880926/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:894630/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:1525289/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:1072628/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:1130706/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:1136603/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:1181342/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:1255539/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:1324586/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:1389780/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:1435956/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:1436472/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:1447556/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:1066706/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:1557233/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:1569816/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:157239/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:1595986/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:1605920/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:1649550/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:184399/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:206631/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:305710/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAcg  <  1:307773/57‑1 (MQ=255) cACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTAc   <  1:730982/56‑1 (MQ=255) |                                                         CACGCGTGGAGGTTCAAACTCCACCGGCATTGACCAGGCTGCAGCCATAATGTTACG  >  W3110S.gb/1535410‑1535466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑