Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	1965811	1965968	158	38 [0]	[0] 10	flhA	predicted flagellar export pore protein

CCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCC  >  W3110S.gb/1965969‑1966023 |                                                       cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGcc  >  1:1047794/1‑55 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGcc  >  1:1076171/1‑55 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGcc  >  1:1483047/1‑55 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGcc  >  1:1566047/1‑55 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGcc  >  1:220962/1‑55 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGcc  >  1:40275/1‑55 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGcc  >  1:532502/1‑55 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGcc  >  1:681395/1‑55 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGc   >  1:235678/1‑54 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCAACCAGACCGTCGc   >  1:682290/1‑54 (MQ=255) |                                                       CCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCC  >  W3110S.gb/1965969‑1966023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑