Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	W3110S.gb	2016025	2016347	323	49 [0]	[0] 93	fliF	flagellar basal‑body MS‑ring and collar protein

CTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGT  >  W3110S.gb/2016348‑2016409 |                                                              cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCTAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1610280/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAg                           >  1:1216402/1‑37 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACGACCAGCAATAGTGGGCCGCGt  >  1:1382635/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGt           >  1:9301/1‑53 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTggg        >  1:842502/1‑56 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCcgcg   >  1:1489657/1‑61 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCcgcg   >  1:1498288/1‑61 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:406492/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:636899/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:600831/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:597830/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:504350/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:499660/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:423211/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:411886/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:693425/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:400202/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:350461/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:348071/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:328481/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:317486/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:298853/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:281406/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:273397/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:244546/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:240304/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:84718/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:992987/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:987731/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:967912/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:955033/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:946166/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:945820/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:921737/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:895880/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:88882/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:885174/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:878038/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:658384/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:841361/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:839098/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:796251/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:783409/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:754796/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:747952/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:747127/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:735438/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1640944/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:682387/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1115800/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1314940/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1306012/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:124774/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1243698/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1241856/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1216845/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1214965/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1211297/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1173584/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1125003/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1317270/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1099432/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1088452/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1083848/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1080660/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1069026/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1047450/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1031460/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1024201/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1008057/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1006154/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:150714/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:201846/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:194045/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1004461/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1592186/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1580526/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1577167/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1561207/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1554230/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1540594/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1540449/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:207645/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1488086/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1455516/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1415320/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1402645/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1385856/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1370156/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1361967/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1326663/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1325643/1‑62 (MQ=255) cTCCGGCAAATCAAAATAACCGACAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGt  >  1:1391222/1‑62 (MQ=255) |                                                              CTCCGGCAAATCAAAATAACCGCCAGCAGCAGGCGAGCACCACCAGCAATAGTGGGCCGCGT  >  W3110S.gb/2016348‑2016409

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑